We run and help maintain the Illumina Analysis Pipeline developed within the CMM.
This pipeline can perform the different steps required to go from sequencing output (FASTQ) to mapped data (BAM) or called and annotated variants (VCF).
We offer the following services (*prices ex VAT):
|Analysis||Unit||Service fee *||Data type|
|Mapping (WGS)||sample||€ 50||DNA|
|germline SNV/InDel calling||sample||€ 0||DNA|
|CNV + SV calling||sample||€ 15||DNA|
|somatic calling||tumor/normal pair||€ 10||DNA|
|Mapping (RNA)||sample||€ 5||RNA|
|Read count analysis||sample||€ 5||mRNA|
|Differential expression analysis + figures||Sample||€ 5||mRNA|