Darrin Higgins, Noun Project, CC BY 3.0 US: https://creativecommons.org/licenses/by/3.0/us/, https://thenounproject.com/term/dna/3928/, changed black icon to white, increased canvas size

NGS analysis

We run and help maintain the Illumina Analysis Pipeline developed within the CMM.

https://github.com/UMCUGenetics/IAP

This pipeline can perform the different steps required to go from sequencing output (FASTQ) to mapped data (BAM) or called and annotated variants (VCF).

We offer the following services (*prices ex VAT):

AnalysisUnitService fee *Data type
Mapping (WGS)sample€ 50DNA
germline SNV/InDel callingsample€ 0DNA
CNV + SV callingsample€ 15DNA
somatic callingtumor/normal pair€ 10DNA
Mapping (RNA)sample€ 5RNA
Read count analysissample€ 5mRNA
Differential expression analysis + figuresSample€ 5mRNA
* Service fees in euro's, excluding VAT

Data

We believe FAIR software and data are an integral part of good research and strive to make data available in accordance to the FAIR principles.

Additionally journals and funding agencies are emphasising the need for proper data management and stewardship.

 

The UBEC provides guidance in the best practices for data storage and sharing and advises on data management plans for grant applications. Below you can find an overview of the different services we provide in this area.